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Similarity/Homology Assessment by Relating K-mers

MATLAB code for Lp-Adaptation: Design Centering and Volume Approximation

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Jenkins pipelines

This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

openfpm_pdata

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.