Merge requests · tothpetroczylab / SHARK

Added status badges and table of content

!44 · created Nov 14, 2024 by schereme
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updated Nov 14, 2024
Further improvements

!43 · created Nov 14, 2024 by schereme develop
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updated Nov 14, 2024
docs: Applied a few more corrections.

!42 · created Nov 14, 2024 by schereme
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updated Nov 14, 2024
docs: Made it clear that capture is not available in PyPI yet.

!41 · created Nov 13, 2024 by schereme
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updated Nov 13, 2024
Minor fixes post capture integration

!40 · created Nov 13, 2024 by schereme
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updated Nov 13, 2024
Merged master into develop

!39 · created Nov 13, 2024 by schereme develop
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updated Nov 13, 2024
New Finalize Steps with command-line-input, removal of old parameters...

!38 · created Nov 13, 2024 by schereme
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updated Nov 13, 2024
Update README.md

!37 · created Oct 15, 2024 by chow 1-version-release-workflow
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updated Oct 25, 2024
New entry point, improved implementation of parallel run

!35 · created Oct 11, 2024 by chow
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updated Oct 18, 2024
Release the beast

!36 · created Oct 15, 2024 by schereme
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updated Oct 15, 2024
new entry point

!34 · created Sep 12, 2024 by chow develop
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updated Sep 18, 2024
chore,docs: Updated the CITATION.cff file.

!33 · created Sep 02, 2024 by schereme
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updated Sep 02, 2024
Merged latest dev changes into master

!32 · created Sep 02, 2024 by schereme
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updated Sep 02, 2024
Changed prediction csv column headers, added an additional key 'visualization_NGD_inverted_scores' where k=2-4 scores are inverted as 1-score for more intuitive visualization, implement check for sequence ID uniqueness

!30 · created Aug 23, 2024 by chow develop
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updated Aug 27, 2024
Add scripts and implement code changes to enable parallel runs.

!31 · created Aug 25, 2024 by chow willis_fixes
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updated Aug 27, 2024
Allow masking character

!28 · created Aug 08, 2024 by chow 1-version-release-workflow
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updated Aug 14, 2024
tests,fix: Applied a fix to the dive test bash script.

!27 · created May 14, 2024 by schereme
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updated May 14, 2024
fix,feat: Output file path, also made output path customisable.

!26 · created Apr 29, 2024 by schereme
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updated May 14, 2024
normal score fix to allow cases of masking character

!24 · created Apr 24, 2024 by chow
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updated Apr 26, 2024
chore: Added Citation File Format - CFF file.

!23 · created Apr 19, 2024 by schereme
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updated Apr 26, 2024