Explore projects

useful functionality for image-, data-analysis and classification of stembryos

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

openfpm_pdata

Project to quantify and measure orientation of network branches in regards to Ch iMap

R utilities for data analysis and bioinformatics

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

PPM client for diffusion on curved surfaces

MATLAB implementation of image naturalization

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

A MATLAB implementation of the split-Bregman algorithm for image segmentation