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Similarity/Homology Assessment by Relating K-mers

Web frontend (VueJs) and CMS (Strapi)

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Documentations for CD-CODE project

Backend APIs (Flask) exposing data from database in RESTful format

A collection of tools to process and manipulate high-throughput sequencing data

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

openfpm_pdata

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

openfpm_pdata

Plugin to fit and unwrap ellipsoid surfaces

private repo with testing jupyter notebooks

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak