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Similarity/Homology Assessment by Relating K-mers

Documentations for CD-CODE project

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

A collection of tools to process and manipulate high-throughput sequencing data

openfpm_pdata

Backend APIs (Flask) exposing data from database in RESTful format

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Web frontend (VueJs) and CMS (Strapi)

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Implementation of 2D unet. Use as base for user projects.

This software package implements the identification of robust topological defects.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

A test repository for teaching

PDE inference from limited spatio-temporal data