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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Backend APIs (Flask) exposing data from database in RESTful format

Web frontend (VueJs) and CMS (Strapi)

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Sequencing analysis pipeline for our paper "Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium"

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Documentations for CD-CODE project

A collection of tools to process and manipulate high-throughput sequencing data

openfpm_pdata

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Region Competition algorithm implemented as an ITK filter (C++).

hidra fork, intended to exist until desy's hidra goes full open source on github or similar