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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Backend APIs (Flask) exposing data from database in RESTful format

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Documentations for CD-CODE project

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

openfpm_pdata

Web frontend (VueJs) and CMS (Strapi)

A collection of tools to process and manipulate high-throughput sequencing data

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Plugin to fit and unwrap ellipsoid surfaces

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Implementation of 2D unet. Use as base for user projects.

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).