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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Documentations for CD-CODE project

A collection of tools to process and manipulate high-throughput sequencing data

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

openfpm_pdata

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Web frontend (VueJs) and CMS (Strapi)

Backend APIs (Flask) exposing data from database in RESTful format

Implementation of 2D unet. Use as base for user projects.

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

openfpm_pdata

PDE inference from limited spatio-temporal data

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Plugin to fit and unwrap ellipsoid surfaces