Explore projects

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

A collection of tools to process and manipulate high-throughput sequencing data

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Scenery - Virtual Reality and Augmented Reality framework

patches to vfb-run to allow multiple xvfb processes on one machine

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Small scripts and bits for data processing interoperability with the cluster

Complementary information concerning the article "Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex"

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

PPM_RC: Distributed-Memory Parallel Image Segmentation