Explore projects

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Region Competition algorithm implemented as an ITK filter (C++).

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Exact stochastic simulation of intracellular transport

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

Data and code for "impossible ecologies" paper

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

hidra fork, intended to exist until desy's hidra goes full open source on github or similar