Explore projects

Project to quantify and measure orientation of network branches in regards to Ch iMap

openfpm_pdata

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

useful functionality for image-, data-analysis and classification of stembryos

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Analysis of ARE in liver tissue. with Julien Delpierre

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

polishing pipelines

Quantitative analysis of diacylglycerol signaling kinetics in single cells

Setting up a python3 installation to run standalone... or with your code

gap closing pipeline based on gcpp

pCMALib: a parallel FORTRAN 90 library for CMA-ES