Explore projects

lipid lipid correlation network using pearson correlation + hierarchical clustering based on cosine sim drawing network using gml

R utilities for data analysis and bioinformatics

Segmentation of the basal cell-matrix contact sites on laminin structure

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

This repository contains source codes and notebook demos for trainin STENCIL-NET.

A Python library for reducing differential equations and dynamical systems.

gap closing pipeline based on gcpp

MATLAB implementation of image naturalization

polishing pipelines