Explore projects

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Complementary information concerning the article "Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex"

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

R utilities for data analysis and bioinformatics

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

Implementation of 2D unet. Use as base for user projects.

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Quantitative analysis of diacylglycerol signaling kinetics in single cells

scripts related to the publication

3day Image analysis course given externally in 2020-12.

Material for an IJ macro course.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.