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Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Particle Tracking C/Java Source Code

Matlab toolbox and a tutorial on trajectory segmentation

MATLAB toolbox for particle tracking

pCMALib: a parallel FORTRAN 90 library for CMA-ES

MSS trajectory analysis

Brownian dynamics simulation of cross-linked filament bundles

Simulation of virus transmission between cells

Exact stochastic simulation of intracellular transport

PPM_RC: Distributed-Memory Parallel Image Segmentation

PPF Library

PPM client for diffusion in complex spaces

PPM client for diffusion on curved surfaces

MATLAB code for Gaussian Adaptation: Black-box optimization and adaptive MCMC

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Forthreads Library

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

gap closing pipeline based on gcpp

openfpm_pdata