Explore projects

Material for an IJ macro course.

Implementation of 2D unet. Use as base for user projects.

R utilities for data analysis and bioinformatics

3day Image analysis course given externally in 2020-12.

scripts related to the publication

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

R package with bioinfo core functions, contact: Scientific Computing, group: bioinfo, internal, desc: "An R package containing the SCF helper functions"

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

Quantitative analysis of diacylglycerol signaling kinetics in single cells

Slicing lc ms data into time ... slices, to run lipidxplorer on the slices

Generate MFQL files automagically