Commits · v10 · bioinfo / ngs_tools

Apr 05, 2018
- revision set intersection helpers · 6870d0c6
  Holger Brandl authored 7 years ago
  
  View commits for tag v10 v10
  
  6870d0c6
Apr 04, 2018
- added score correlation plot to limma workflow · 8f5d78d2
  Holger Brandl authored 7 years ago
  
  8f5d78d2
- added `as_int_matrix` and `expr_matrix_to_df` to diffex commons · 4f2e78ef
  Holger Brandl authored 7 years ago
  
  4f2e78ef
Mar 28, 2018
- print contrasts · b64a4f61
  Holger Brandl authored 7 years ago
  
  b64a4f61
- merged with remote · 41281865
  Holger Brandl authored 7 years ago
  
  41281865
- added support for design; fixed q/p cutoff parameters · 703ce35f
  Holger Brandl authored 7 years ago
  
  703ce35f
Mar 23, 2018
- changed input to counts matrix and design; changed handeling of input data;... · 13ce56ad
  Lena Hersemann authored 7 years ago
  
  changed input to counts matrix and design; changed handeling of input data; added sequencing saturation plot
  13ce56ad
- added information on UMI-tools docker container · 5baa8f19
  Lena Hersemann authored 7 years ago
  
  5baa8f19
- added option to directly provide biomart database · bcb9b774
  Lena Hersemann authored 7 years ago
  
  bcb9b774
Mar 20, 2018
- added installation of last · 1a996c1c
  Lena Hersemann authored 7 years ago
  
  1a996c1c
Mar 13, 2018
- added support for custom designs to limma workflow · 4a0a50b2
  Holger Brandl authored 7 years ago
  
  4a0a50b2
Mar 09, 2018
- revised imputation scheme for ms data · 6c28e105
  Holger Brandl authored 7 years ago
  
  6c28e105
Mar 08, 2018
- updated limma instructions · ebb14943
  Holger Brandl authored 7 years ago
  
  ebb14943
- moved limma workflow into ngs tools · 873e2471
  Holger Brandl authored 7 years ago
  
  873e2471
- removed unused files · e833e7c9
  Holger Brandl authored 7 years ago
  
  e833e7c9
Feb 26, 2018
- change "fetch the data" section to prevent disclosure of login details · 719fe937
  Lena Hersemann authored 7 years ago
  
  719fe937
Feb 05, 2018
- added install instructions for flash · 6747f0ad
  Holger Brandl authored 7 years ago
  
  6747f0ad
- added more adapters from Ian · 28132c72
  Holger Brandl authored 7 years ago
  
  28132c72
Jan 31, 2018
- cont cutadapt pe report (still incomplete) · fdb214a3
  Holger Brandl authored 7 years ago
  
  fdb214a3
- allow to override custom star params with environment variable · 2418d783
  Holger Brandl authored 7 years ago
  
  2418d783
- added standard illumina adapters as reference for cutadapt · 7c330dc3
  Holger Brandl authored 7 years ago
  
  7c330dc3
- impl cutadapt report for pe data · a7a09f11
  Holger Brandl authored 7 years ago
  
  a7a09f11
- updated igv and added helper · 4ee94457
  Holger Brandl authored 7 years ago
  
  4ee94457
- started cutadapt summary report migration to latest version · 5d698d72
  Holger Brandl authored 7 years ago
  
  5d698d72
Jan 30, 2018
- impl bonobo genome build · 843116cf
  Holger Brandl authored 7 years ago
  
  843116cf
Jan 29, 2018
- added more debugging vis for batch correction util · dc070d46
  Holger Brandl authored 7 years ago
  
  dc070d46
Jan 25, 2018
- create session file after pathway vis · c2046343
  Holger Brandl authored 7 years ago
  
  c2046343
Jan 22, 2018
- matched node.sum config with cp_enrichment.R · 7a440b21
  Holger Brandl authored 7 years ago
  
  View commits for tag v9 v9
  
  7a440b21
Jan 19, 2018
- removed duplicated pathway rendering · cc61f7ea
  Holger Brandl authored 7 years ago
  
  cc61f7ea
- used fixed port for expression explorer · 68cd1899
  Holger Brandl authored 7 years ago
  
  68cd1899
- added icon to expression explorer · 2fa83cdf
  Holger Brandl authored 7 years ago
  
  2fa83cdf
- fixed shebang · 31c03c20
  Holger Brandl authored 7 years ago
  
  31c03c20
- replaced score rounding impl · e8c671e4
  Holger Brandl authored 7 years ago
  
  e8c671e4
- fixed typo in docs · 4d51c7a8
  Holger Brandl authored 7 years ago
  
  4d51c7a8
- added multi id test example · f0c57753
  Holger Brandl authored 7 years ago
  
  f0c57753
- more eyefriendly ci width · 6a5be93a
  Holger Brandl authored 7 years ago
  
  6a5be93a
- added url parameters for gene_id and gene_name · 1a623b17
  Holger Brandl authored 7 years ago
  
  1a623b17
Jan 18, 2018
- appify explorer app without bash wrapper · 9e535dfc
  Holger Brandl authored 7 years ago
  
  9e535dfc
- added support for reportName inheritance · 788904dd
  Holger Brandl authored 7 years ago
  
  788904dd
Jan 16, 2018
- added cellranger docker notes · d17cae39
  Holger Brandl authored 7 years ago
  
  d17cae39