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openfpm_pdata

Jenkins pipelines

Improving contrast in confocal data by degrading image with model of light scattering

This software package implements the identification of robust topological defects.

Analysis of ARE in liver tissue. with Julien Delpierre

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

Segmentation of the basal cell-matrix contact sites on laminin structure

Code used to prepare events plots for controls and morpholinos experiments for lineage analysis

Little tiny model of Ath5-Ptf1a interactions in fate decisions in the embryonic zebrafish retina.

This repository is all about simulating flow driven pruning in biological flow networks.