Commits · v7 · steinbac / ngs_tools · GitLab

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Nov 13, 2017
- more consistent argument naming · a88ffae4
  Holger Brandl authored 7 years ago
  
  View commits for tag v7 v7
  
  a88ffae4
Nov 09, 2017
- added common q-score color scale for enrichment plots · dbcf747a
  Lena Hersemann authored 7 years ago
  
  dbcf747a
- adjusted sessionInfo() output file · 2c462675
  Lena Hersemann authored 7 years ago
  
  2c462675
Nov 07, 2017
- Merge remote-tracking branch 'origin/master' · 14653223
  Lena Hersemann authored 7 years ago
  
  14653223
- added output print of run configurations and sessionInfo() · 2cb93100
  Lena Hersemann authored 7 years ago
  
  2cb93100
Oct 27, 2017
- added support for chimpanzee · f4aa55d8
  Holger Brandl authored 7 years ago
  
  View commits for tag v6 v6
  
  f4aa55d8
- removed duplicated helper functions · a2e5630c
  Holger Brandl authored 7 years ago
  
  a2e5630c
- adjusted geom_text position of volcano plots · fd8d9310
  Lena Hersemann authored 7 years ago
  
  View commits for tag v5 v5
  
  fd8d9310
- extend guess_mart to Chinese hamster (cchok1gshd_gene_ensembl) · 9f08a922
  Lena Hersemann authored 7 years ago
  
  9f08a922
Oct 26, 2017
- added DESeq2 option betaprior with default = TRUE; corrected volcano plot... · 7ea79694
  Lena Hersemann authored 7 years ago
  
  added DESeq2 option betaprior with default = TRUE; corrected volcano plot labelling; removed default of geneInfo option
  7ea79694
- use tag for diffex_commons.R sourcing · f852f099
  Holger Brandl authored 7 years ago
  
  View commits for tag v4 v4
  
  f852f099
- removed unused comments · 08bd4f61
  Holger Brandl authored 7 years ago
  
  08bd4f61
- optimized thread options · 1a5e5190
  Holger Brandl authored 7 years ago
  
  1a5e5190
- Merge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_tools · 1168f73a
  Holger Brandl authored 7 years ago
  
  1168f73a
- removed jittering · 8928d706
  Holger Brandl authored 7 years ago
  
  8928d706
Oct 25, 2017
- Merge remote-tracking branch 'origin/master' · fa9b01e3
  Lena Hersemann authored 7 years ago
  
  fa9b01e3
- added bedtools2-2.25 and reset of joblist task name before running dge_bigwig · ea53f611
  Lena Hersemann authored 7 years ago
  
  ea53f611
- removed jl backward compatibility wrappers · 6d208308
  Holger Brandl authored 7 years ago
  
  6d208308
- added chimp genome · 7c63e7cd
  Holger Brandl authored 7 years ago
  
  7c63e7cd
Oct 24, 2017
- fixed typo · 76b09f2b
  Holger Brandl authored 7 years ago
  
  76b09f2b
- added git to docker base image · 98b55594
  Holger Brandl authored 7 years ago
  
  98b55594
Oct 19, 2017
- project -> PRJ_NAME · 79544692
  Lena Hersemann authored 7 years ago
  
  79544692
- more robust PATH preparation · 57a0d8c0
  Lena Hersemann authored 7 years ago
  
  57a0d8c0
Oct 16, 2017
- added option to give own geneInfo file · e3b0de32
  Lena Hersemann authored 7 years ago
  
  e3b0de32
Oct 13, 2017
- added diffex_commons · c3c9f565
  Lena Hersemann authored 7 years ago
  
  c3c9f565
Oct 12, 2017
- added path to bowtie-1.1.2; corrected "runThreadN 5" · 0715cb6a
  Lena Hersemann authored 7 years ago
  
  View commits for tag v3 v3
  
  0715cb6a
- updated numbering, removed comment · 3ba0c079
  Lena Hersemann authored 7 years ago
  
  3ba0c079
Oct 11, 2017
- use internal cp_utils with tag · 75610eeb
  Lena Hersemann authored 7 years ago
  
  View commits for tag v2 v2
  
  75610eeb
- added cp_utils.R · 4aa698a5
  Lena Hersemann authored 7 years ago
  
  4aa698a5
- added option to check R & python version · f14d45eb
  Lena Hersemann authored 7 years ago
  
  View commits for tag v1 v1
  
  f14d45eb
- diabled printing of failing pathway renderings · c45ac471
  Lena Hersemann authored 7 years ago
  
  c45ac471
Sep 20, 2017
- added workaround for invalid pathway ids · 06788fa7
  Holger Brandl authored 7 years ago
  
  06788fa7
- simplified level assignment · 19d31786
  Holger Brandl authored 7 years ago
  
  19d31786
Sep 19, 2017
- updated datautils to v1.44 · 9c31a387
  Holger Brandl authored 7 years ago
  
  9c31a387
Sep 18, 2017
- added featureCounts · 08ada818
  Holger Brandl authored 7 years ago
  
  08ada818
- fixed common bin path · e6010183
  Holger Brandl authored 7 years ago
  
  e6010183
Sep 15, 2017
- added moods and custom java to setup · fb6ff9b9
  Holger Brandl authored 7 years ago
  
  fb6ff9b9
Sep 14, 2017
- removed error message (missing pathways) as it interfered with knitter · 45bd2866
  Lena Hersemann authored 7 years ago
  
  45bd2866
- removed `/` when part of the contrast label; adjusted error message for missing pathway data · 9fbb9fb8
  Lena Hersemann authored 7 years ago
  
  9fbb9fb8
Sep 08, 2017
- changed holger to brandl in furiosa paths · 1fa78d9e
  Holger Brandl authored 7 years ago
  
  1fa78d9e