Explore projects

Quantitative analysis of diacylglycerol signaling kinetics in single cells

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Implementation of 2D unet. Use as base for user projects.

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

scripts related to the publication

This repository contains source codes and notebook demos for trainin STENCIL-NET.

PDE inference from limited spatio-temporal data

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Script for publication - Matrix topology guides collective cell migration in vivo

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Bifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments

A web service for calculating the Levenshtein distance between two sequences

This repository is all about simulating flow driven pruning in biological flow networks.

MotionTracking project to Analyze Hepatocyte Cages.

This software package implements the identification of robust topological defects.