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Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

A web service for calculating the Levenshtein distance between two sequences

Brownian dynamics simulation of cross-linked filament bundles

Implementation of the fast curvature filters for images.

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Forthreads Library

PPM client for diffusion in complex spaces

Particle Tracking C/Java Source Code

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

hidra fork, intended to exist until desy's hidra goes full open source on github or similar