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MATLAB Toolbox for cell-outline segmentation in phase-contrast images

Python wrappers for LibAPR

MATLAB code for Gaussian Adaptation: Black-box optimization and adaptive MCMC

Segmentation of the basal cell-matrix contact sites on laminin structure

PPM client for diffusion in complex spaces

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Brownian dynamics simulation of cross-linked filament bundles

Repository containing the Matlab code used in Iglesias et al - Charge density reduction promotes ribozyme activity in RNA-peptide protocells via fluidization and magnesium partitioning.

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Jenkins pipelines