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This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

A MATLAB implementation of the split-Bregman algorithm for image segmentation

Python wrappers for LibAPR

Place to store the code I used and workflow I used to quantifiativly analyze microscopy data

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

PPM client for diffusion on curved surfaces

MATLAB code for Lp-Adaptation: Design Centering and Volume Approximation

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Repository containing the Matlab code used in Iglesias et al - Charge density reduction promotes ribozyme activity in RNA-peptide protocells via fluidization and magnesium partitioning.

Forthreads Library

parallel parameter homotopy through bertini