Explore projects

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

multiparameter persistence

Image analysis course (4.5h): Concepts and hands-on with Fiji.

PPF Library

pCMALib: a parallel FORTRAN 90 library for CMA-ES

repo to contain example notebooks to run DeepContrast

MATLAB toolbox for particle tracking

MATLAB code for Gaussian Adaptation: Black-box optimization and adaptive MCMC

Improving contrast in confocal data by degrading image with model of light scattering

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"