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Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

A collection of tools to process and manipulate high-throughput sequencing data

Documentations for CD-CODE project

openfpm_pdata

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Web frontend (VueJs) and CMS (Strapi)

Backend APIs (Flask) exposing data from database in RESTful format

Similarity/Homology Assessment by Relating K-mers

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Implementation of 2D unet. Use as base for user projects.

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

openfpm_pdata

PDE inference from limited spatio-temporal data

Plugin to fit and unwrap ellipsoid surfaces

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak