Explore projects

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Project to quantify and measure orientation of network branches in regards to Ch iMap

R utilities for data analysis and bioinformatics

Segmentation of the basal cell-matrix contact sites on laminin structure

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Implementation of 2D unet. Use as base for user projects.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Plugin to fit and unwrap ellipsoid surfaces

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Region Competition algorithm implemented as an ITK filter (C++).

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells