Explore projects

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Region Competition algorithm implemented as an ITK filter (C++).

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Plugin to fit and unwrap ellipsoid surfaces

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Simulation of virus transmission between cells

Segmentation of the basal cell-matrix contact sites on laminin structure

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

R utilities for data analysis and bioinformatics