Explore projects

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Plugin to fit and unwrap ellipsoid surfaces

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Implementation of 2D unet. Use as base for user projects.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Segmentation of the basal cell-matrix contact sites on laminin structure

R utilities for data analysis and bioinformatics

Project to quantify and measure orientation of network branches in regards to Ch iMap

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

A test repository for teaching

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

MATLAB code for deconvolving snakes

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

A web service for calculating the Levenshtein distance between two sequences