Explore projects

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Implementation of 2D unet. Use as base for user projects.

Analysis of ARE in liver tissue. with Julien Delpierre

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Segmentation of the basal cell-matrix contact sites on laminin structure

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Project to quantify and measure orientation of network branches in regards to Ch iMap

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

A test repository for teaching

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

MATLAB code for deconvolving snakes

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".