Explore projects

Project to quantify and measure orientation of network branches in regards to Ch iMap

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Implementation of the fast curvature filters for images.

Implementation of 2D unet. Use as base for user projects.

A test repository for teaching

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

PDE inference from limited spatio-temporal data

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

Plugin to fit and unwrap ellipsoid surfaces

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

Theory analysis and code for studying Drosophila wing disc eversion